Using NCBI/NLM as a way to curate a core's bibliography?: Core Administrators Network Forum: ABRF Discussion Forums

Using NCBI/NLM as a way to curate a core's bibliography?

Has anyone done this? I don't know if it's in alignment with the "terms of use"
for the NCBI site.

I recognize that this may not be as useful for cores that don't do biomedical
type research support (e.g., engineering, chemistry, physics type cores). It
would be fantastic if this was not an issue.

I don't expect that finding publications that used our cores will get a whole
lot easier using the MyBibliography, but perhaps displaying and keeping an
up-to-date running list could be made simpler.

Rest of post

Thanks!
Doug

I am curious what you are really asking.


Before the pubmed update, I had searches set up to look for papers that
acknowledged our core and papers that very likely used the core.  Couldn't be
completely automated because of high rate of non-acknowledgements.


Also, libraries set up queries to do things like check for staff papers.  We
get emails from our library asking to confirm (or deny) authorships that their
automated search system finds.


Michael Cammer, Sr Research Scientist, DART Microscopy Laboratory

NYU Langone Health, 540 First Avenue, SK2 Microscopy Suite, New York, NY  10016

<email obscured><email obscured>>
http://nyulmc.org/micros  http://microscopynotes.com/

Voice direct only, no text or messages:  1-914-309-3270 and 1-646-501-0567

Rest of post

________________________________
From: Core Administrators Network Forum <email obscured>> on behalf of
dcromey <email obscured>>
Sent: Saturday, May 1, 2021 10:47:29 AM
To: <email obscured>
Subject: [core administrators network forum] Using NCBI/NLM as a way to curate
a core's bibliography?

[EXTERNAL]

Has anyone done this? I don't know if it's in alignment with the "terms of use"
for the NCBI site.

I recognize that this may not be as useful for cores that don't do biomedical
type research support (e.g., engineering, chemistry, physics type cores). It
would be fantastic if this was not an issue.

I don't expect that finding publications that used our cores will get a whole
lot easier using the MyBibliography, but perhaps displaying and keeping an
up-to-date running list could be made simpler.

Thanks!
Doug
――
View topic
https://urldefense.com/v3/__http://list.abrf.org/r/topic/5LPpJx1Of4ED3ai1IE5E72__;!!MXfaZl3l!NSzbl1QxwYUJi-UzgTsk7MN3vVdyEfYjslXDiU_3EE7mErqv4GdcrxxztVGtgTcVbnIO1C0$
Leave group <email obscured>?Subject=Unsubscribe

------------------------------------------------------------
This email message, including any attachments, is for the sole use of the
intended recipient(s) and may contain information that is proprietary,
confidential, and exempt from disclosure under applicable law. Any unauthorized
review, use, disclosure, or distribution is prohibited. If you have received
this email in error please notify the sender by return email and delete the
original message. Please note, the recipient should check this email and any
attachments for the presence of viruses. The organization accepts no liability
for any damage caused by any virus transmitted by this email.
=================================

I'm not thinking about an automated way to find publications that use our core,
as nice as that would be. I think that core managers will always need to review
the methods & acknowledgements to finds those that used the core and neglected
to say anything.

I'm thinking more about a way to host the bibliography once we've discovered
the publications that have used a core or cores. Many of our University's
Drupal websites tried to use a module that was intended to create a faculty
member's bibliography on the faculty's biographical home page and over time it
became clear that the module didn't work well. Most of the bio pages now just
use the NCBI "MyBibliography" link instead. That got me wondering if cores
could do something similar as a way to curate their bibliographies. As this is
a little bit different of a use case than I suspect the NCBI intended, I wanted
to see if anyone else had tried this and gotten it to work. Preferably with
multiple cores.

The one caveat I see is that cores that don't do biomedical research might not
find something that pulls from PubMed all that useful.

Thanks for responding!
Doug

Hi.

I use Publons for keeping track of our publications. The nice thing is you can
import publications using their DOI. I like Publons for their graphic that
shows publications and citations over time. I'm not sure how well it works
outside of the biological sciences. Currently, I manually add the publications
through the DOI.

Here's the link to mine, in case you are interested:

https://publons.com/researcher/2931191/biofrontiers-advanced-light-microscopy-core/metrics/

Rest of post

Joe

-----
Joe Dragavon

Director

BioFrontiers Advanced Light Microscopy Core

JSCBB C315

University of Colorado, Boulder



https://advancedimaging.colorado.edu/


Phone: (303) 735-6988

Cell: (720) 934-2933

On 5/3/21, 8:46 AM, "Core Administrators Network Forum on behalf of dcromey"
<email obscured> on behalf of <email obscured>> wrote:

    I'm not thinking about an automated way to find publications that use our
core, as nice as that would be. I think that core managers will always need to
review the methods & acknowledgements to finds those that used the core and
neglected to say anything.

    I'm thinking more about a way to host the bibliography once we've
discovered the publications that have used a core or cores. Many of our
University's Drupal websites tried to use a module that was intended to create
a faculty member's bibliography on the faculty's biographical home page and
over time it became clear that the module didn't work well. Most of the bio
pages now just use the NCBI "MyBibliography" link instead. That got me
wondering if cores could do something similar as a way to curate their
bibliographies. As this is a little bit different of a use case than I suspect
the NCBI intended, I wanted to see if anyone else had tried this and gotten it
to work. Preferably with multiple cores.

    The one caveat I see is that cores that don't do biomedical research might
not find something that pulls from PubMed all that useful.

    Thanks for responding!
    Doug
    ――
    View topic http://list.abrf.org/r/topic/6Ps93UdE8SDeuoD0u3X1EQ
    Leave group <email obscured>?Subject=Unsubscribe

You cannot post because you are not logged in.

Using NCBI/NLM as a way to curate a core's bibliography?

Already a member?

Not a member?